Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs4915379 chr1:197161428 A/G 6.59E-8 406 2.23 16.37 14.07 KM Plot
STAD rs4952802 chr2:46355445 A/G 1.16E-7 401 2.03 15.43 14.27 KM Plot
STAD rs535390 chr17:72894354 A/G 9.57E-6 404 6.27 19.6 14.22 KM Plot
STAD rs55946024 chr1:227438224 T/C 0 404 14.25 14.45 1.48 KM Plot
STAD rs56308742 chr1:227438341 A/G 0 404 14.25 14.45 1.48 KM Plot
STAD rs56834719 chr1:227332543 G/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs56951279 chr1:116319058 CT/C 2.22E-5 396 14.63 14.23 7.55 KM Plot
STAD rs57276421 chr1:227408139 T/A 0 405 14.27 14.45 1.48 KM Plot
STAD rs57439652 chr1:227446564 A/AT 0 404 14.25 14.45 1.48 KM Plot
STAD rs57513303 chr1:227305968 C/T 0 405 14.37 14.15 1.48 KM Plot
STAD rs57711103 chr1:227524673 C/A 6.39E-11 403 14.32 14.15 2.57 KM Plot
STAD rs5821161 chr17:55186084 GA/G 3.21E-7 404 14.23 15.43 5.97 KM Plot
STAD rs58489467 chr1:227440294 A/C 0 404 14.25 14.45 1.48 KM Plot
STAD rs58626575 chr2:232814031 G/A 0 390 14.27 13.32 0.1 KM Plot
STAD rs58913072 chr3:97068036 A/C 1.85E-8 402 14.23 19.23 3.25 KM Plot